I'd say that it is necessary to keep in mind what you're relating - it would probably be unwise to try to join a DATE column with a CLOB column, for example. During design process, you - in most cases - can not know which values will be stored into relating columns.
As a physical model is created upon underlying logical model, usually they are equal. However, during implementation process you'll sometimes find out that certain things should be done differently than you designed in the logical model.