I don't know much about Shell script.
I guessed $emplid was made like 'emplid1','emplid2', ... ,'emplidn'.
If you can modify it like 'emplid1,emplid2, ... ,emplidn'.
You can try this:
where LOCATE(emplid,$emplid) = 0
I assumed column emplid doesn't include comma(',').
If length of emplid is 6, you can make about 4500 emplid list.