Is there any way to control the 'not logged initially' from the server so that you can turn if off? Example: if a script ran which used 'not logged initially' if would get logged anyway and thus not get the hadr system out of sync.

If you have DB2 9.5 (at least FP 4) or higher, then set the following to YES in the db config.

Block non logged operations (BLOCKNONLOGGED) = YES

It will not allow commands to be run that are not logged, such as NONRECOVERABLE Loads, and the situation you mentioned.

Great, were using 9.7, i see the option in the db cfg.
Thanks a lot.