The last step of the mysql toolkit should show you any errors which occurred during the migration. Did you read through that whole screen? If you saved the report then you should be able to check that. If not, rerun the migration (yes this is a pain) and make sure to save the creation, inserts, and migration status report (or whatever it is called) to files.
Something similar happened to me where it got hung up on a "{" character I believe. It only ended up importing like a tenth of a table. But it should only affect the inserts, not the creates...if the database wasn't created then there is most likely something in the Access schema that the toolkit can't understand.