I have a small doubt regarding my program. Hope you will help me in solving that.
let the input seq is "ttttttttttagaaaagavtttggyttttttt";
here the input matches with $a only with the letters in bold : ttttttttttagaaaagavtttggyttttttt
i want to know what we can do to give input showing both matches and mismatches in the input.(mismatch shold me shown as a hiphen)
That means the output should be like this:
The given sequence matches with the pattern at - - - - - - - - - - agaaaagav- - -ggy - - - - - - -